Marker and individual quality summary

Missing data per marker and per individual, genotype counts, and the chi-square test of each marker against its expected Mendelian ratio (1:2:1, 3:1, 1:1). The significance threshold is Bonferroni-corrected for the number of markers.

Usage

qc_summary(d, alpha = 0.05)

Arguments

d

An lm_data object.

alpha

Family-wise significance level for segregation distortion.

Value

A list with markers and individuals data frames and the corrected threshold alpha_bonferroni.