Group markers (Linkmapper 0.1 interface)

Kept for scripts written for Linkmapper 0.1. Prefer linkage_groups().

Usage

group_markers(onemap_obj, lod = 3, max_rf = 0.5, map_fun = "kosambi")

Arguments

onemap_obj

A onemap object.

lod

LOD threshold.

max_rf

Largest recombination fraction treated as linkage.

map_fun

"kosambi" or "haldane".

Value

The onemap group object.